rs30313578 SNP Detail

Summary

• ID
  rs30313578
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48591535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGCTCTATT AAAATGAATT CTCATGAGCA AGCACAGGGA AGACCAAAAT TTATTTGGAA
  CTGACATTTA TTAACATTAT GCACCAGGAA TCTATCATAA ATATTTTCCC CTGAAATAAA
  ATGTCTTAGT TACTTTTCTG TTTCTGTGAT AAAACACCAT GACCGAGGCA ACTTATAAGA
  AGCATTTAAT TTGGCTTATG GTTTCAGAGG ATTTGAGTCC ATAATGGTGG AGTGAAGGGA
  CAGCTGAGGA CACACCTTGA TCAATAACCT ACACACACAC ACACACACAC ACACACACAC
  W
  CACACACCTA GAGAGAGACA GAGACAGAGA CAGACAGAAG AACCGGGAAT GGCACAAGTC
  TTTTGAAACA TCAAAGCCCA CCCCCAGTGA CACACTCCTG TCAATGAGGT CATACTTCCT
  TCTACCAACT GAGGGCTAAG TATTCAGACG TATGGCCCCT CTGGAGGCCA TTCTCATCCA
  AACTGCCACA GAAAGTCAGT TGACACTAAG ACATAGGTCA GTCTTCCACC CTGGACTGAT
  AATGCCACCC CGAGTTGTGT GTCACACTCT CAGTTCCATC AGCCAGTTTG TCTTTTGCTG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45916999	mCV23167874	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30313578					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48591535 () rs orientation: forward

Symbol	Name	Function Class
Gm38804	predicted gene, 38804	187 bp upstream
Gm44965	predicted gene 44965	within coordinates
Gm45021	predicted gene 45021	1351 bp downstream
Gm67224	predicted gene, 67224	795 bp upstream
Rr135555	regulatory region 135555	735 bp distal
Tssr60741	transcription start site region 60741	860 bp upstream
Tssr60742	transcription start site region 60742	819 bp upstream
Zfp775	zinc finger protein 775	within coordinates