rs30314098 SNP Detail

Summary

• ID
  rs30314098
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83484730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAT TAAGCATGGT ATTGGCTCTG
  W
  AAGAATGAAT CCTGGAGAGG AGACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45914520	mCV27581725	ABI	CRAMUS_MOUSE	f	SNP		T	A					T		T
ss51354491	NES13746105	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	A	A	T		T	T	A	T	T	A	A	T	A
ss133348069	ENSMUSSNP4400428	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30314098					SNP	T	T	A	T	A	A	T	T	T	T	A	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51354491	NES13746105	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83484730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17605	CpG island 17605	362 bp distal
Dguok	deoxyguanosine kinase	843 bp upstream
Rr399724	regulatory region 399724	570 bp downstream
Rr632884	regulatory region 632884	1891 bp distal
Rr632885	regulatory region 632885	289 bp distal
Rr632886	regulatory region 632886	1788 bp proximal
Tssr1908	transcription start site region 1908	642 bp downstream
Tssr61663	transcription start site region 61663	1488 bp upstream
Tssr61664	transcription start site region 61664	925 bp upstream
Tssr61665	transcription start site region 61665	913 bp upstream
Tssr61666	transcription start site region 61666	898 bp upstream
Tssr61667	transcription start site region 61667	872 bp upstream
Tssr61668	transcription start site region 61668	854 bp upstream
Tssr61669	transcription start site region 61669	821 bp upstream