rs30314515 SNP Detail

Summary

• ID
  rs30314515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122581093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gaggcagaa gcaggcggat ctctgagttc
  aagaccagca tagcctactg agagaattcc aggatggcca ggactacaca gaaaccctgt
  ctcacataaa caaaaAGTCC AGAtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
  R
  tgtAcagaag agagtgtagg acccctcaga accaaagtga gaggtgtttg cagaacacca
  ggcttgttac atagttgctg ggttctgaac tccagtgcac aaaatttagc cacagtcacc
  tcttacctgc tgagccttct ctccagcctc                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J	LG/J	SM/J
ss45916017	mCV22300209	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss321934195	CHEV_6_122554152	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J	LG/J	SM/J
rs30314515					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122581093 () rs orientation: forward

Symbol	Name	Function Class
Apobec1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	1690 bp upstream
Gdf3	growth differentiation factor 3	1269 bp downstream
Rr399899	regulatory region 399899	1622 bp downstream
Rr399900	regulatory region 399900	within coordinates
Rr638222	regulatory region 638222	1774 bp distal
Rr638223	regulatory region 638223	1200 bp distal
Rr638224	regulatory region 638224	1117 bp proximal
Rr638225	regulatory region 638225	1430 bp proximal
Rr638226	regulatory region 638226	1538 bp proximal
Tssr58686	transcription start site region 58686	1429 bp downstream
Tssr62923	transcription start site region 62923	1790 bp upstream
Tssr62924	transcription start site region 62924	1734 bp upstream
Tssr62925	transcription start site region 62925	1712 bp upstream
Tssr62926	transcription start site region 62926	1022 bp upstream
Tssr62927	transcription start site region 62927	242 bp downstream