rs30315315 SNP Detail

Summary

• ID
  rs30315315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55151199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTCTCT TCAGGGGAAC
  AAGTCTCTGC GTTTCCCCAC ACCGAACTCG GTTGGATCAC CATTTTCCAG CAACGTTTGG
  CACTGCTGAC CACCTTCTAA CCTTCCTCCC TTGACTGCCA AGTCTCACCT TGTGGCTTTT
  TTCTCCTGTC CATTTTCTCC ATGGCAGTCA CATGTTCCTT CTCCTGTTCA GCGTTATGTG
  Y
  ACCTTACCAT CTCATGCCTT TACCTCCGCA CTATTTGTAT TAGACACCGT CGACCCAGAC
  AAGACACAAC TGCTTCCTGT TCCCACCTCT TCTTAGAGTC CCAAGTCGGT GAAGCAACCT
  CTTGGGAGCC CACATAAGCG TGAATGTCTC ATAGAGGCCT CAAGAGAACA ATCATGCAAC
  ACCCTCTCCA TTAATCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39173451	mCV25267211	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss139573046	ENSMUSSNP1019529	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss324640834	CHEV_14_55532579	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30315315					SNP	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55151199 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6478	CpG island 6478	436 bp distal
Slc22a17	solute carrier family 22 (organic cation transporter), member 17	610 bp upstream
Tssr128658	transcription start site region 128658	1411 bp upstream
Tssr128659	transcription start site region 128659	1284 bp upstream
Tssr128660	transcription start site region 128660	700 bp upstream
Tssr128661	transcription start site region 128661	658 bp upstream
Tssr128662	transcription start site region 128662	614 bp upstream