rs30316017 SNP Detail

Summary

• ID
  rs30316017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11172910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGGTTATACC ACTGAAGAAA GTGACACCTC TCTCCTCAGC CACTATTAAC TGTTAATAGT
  CCCTCAGGGT AGGGGTGAAG CCTCCAGAGC CCTTCCTCCC TCTAATGAAA AAGTTGATGA
  CTCTAGTGTT GGGTAGGTGA CCACATCTGT AGTGAGTTCA TGAGTGCATC ACCCATGTTA
  CATTCAGAGG ACAATGTTGC ACAGCCCTTT CTACCACTTC TGACTTTAAA TCTTCCTACC
  CTCTCTTCTA TAACGTTCAT GGAGCCTTGG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  Y
  GTGTGTGCGC GCGTCCCAGA AAAATGATTT AAAACATCTA AAACGTTTTT ACTTTAAAAT
  AATTGTGTAT CTGCATGTGT GTTTGGATGC CTATGAAAAA GGGTGTCAGG TCCCCTGAAG
  TTTAAGTTGG CACCGAGCTG CCTGATAAGA GTGTTAGCAA TTAAACTCTG GTTCTCTGCA
  AAAACAGCAA GATTCATGAC CACTGAACCA GCTCACCAAC CTCAAAAAAG ATTTTTTAAA
  ATAAAATGAA GAGAATGACA TCTTCAGAGG ACACACCAAT TTCTTCATGA ACTGCTTCCT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39669456	mCV25122742	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30316017					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11172910 () rs orientation: forward

Symbol	Name	Function Class
4930526L06Rik	RIKEN cDNA 4930526L06 gene	1271 bp upstream
Ms4a13	membrane-spanning 4-domains, subfamily A, member 13	within coordinates
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Tssr158299	transcription start site region 158299	1138 bp downstream
Tssr158300	transcription start site region 158300	1154 bp downstream