rs30316343 SNP Detail

Summary

• ID
  rs30316343
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:12742992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCA GTCTTTTTTT TTTTCCCTCG
  M
  AGCGTCTGCC TTCATCTCTC CTCCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39668973	mCV23019268	ABI	CRAMUS_MOUSE	f	SNP		A	A				A	C
ss50620926	NES13638004	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		C	A	A	C	A	A	C	A
ss146065408	ENSMUSSNP2300526	ENSEMBL	ENSEMBL_Sanger	f	SNP			A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30316343					SNP	A	A	A	A	A	A	A	C	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50620926	NES13638004	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:12742992 () rs orientation: forward

Symbol	Name	Function Class
Cntf	ciliary neurotrophic factor	within coordinates
Gm44505	predicted readthrough transcript (NMD candidate), 44505	within coordinates
Tssr158445	transcription start site region 158445	185 bp upstream
Tssr158446	transcription start site region 158446	143 bp upstream
Zfp91	zinc finger protein 91	1392 bp downstream