rs30317864 SNP Detail

Summary

• ID
  rs30317864
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41492647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC TAGAGCTCAC ATTCTCCCCC
  K
  GCTCCCGATG GCGCTCCTGG AAGCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss46394469	mCV23038018	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
ss322927321	CHEV_9_41389434	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs30317864					SNP	G	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41492647 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	557 bp upstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	575 bp upstream
Rr677060	regulatory region 677060	1847 bp distal
Rr677061	regulatory region 677061	1363 bp distal
Rr677062	regulatory region 677062	within coordinates
Rr677063	regulatory region 677063	1 bp proximal
Rr677064	regulatory region 677064	115 bp proximal
Rr677065	regulatory region 677065	331 bp proximal
Rr677066	regulatory region 677066	662 bp proximal
Rr677067	regulatory region 677067	789 bp proximal
Rr677068	regulatory region 677068	1516 bp proximal
Tssr84512	transcription start site region 84512	1682 bp downstream
Tssr84513	transcription start site region 84513	1634 bp downstream
Tssr84514	transcription start site region 84514	1459 bp downstream
Tssr84515	transcription start site region 84515	1384 bp downstream
Tssr84516	transcription start site region 84516	1360 bp downstream
Tssr84517	transcription start site region 84517	1334 bp downstream
Tssr84518	transcription start site region 84518	634 bp downstream
Tssr84519	transcription start site region 84519	599 bp downstream
Tssr84520	transcription start site region 84520	429 bp downstream
Tssr84521	transcription start site region 84521	384 bp downstream
Tssr84522	transcription start site region 84522	347 bp downstream
Tssr84523	transcription start site region 84523	251 bp downstream
Tssr84524	transcription start site region 84524	91 bp downstream
Tssr84525	transcription start site region 84525	35 bp downstream
Tssr84526	transcription start site region 84526	within coordinates
Tssr84527	transcription start site region 84527	649 bp upstream
Tssr84528	transcription start site region 84528	1673 bp upstream
Tssr88995	transcription start site region 88995	1828 bp upstream
Tssr88996	transcription start site region 88996	1788 bp upstream
Tssr88997	transcription start site region 88997	543 bp upstream