rs30318706 SNP Detail

Summary

• ID
  rs30318706
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86829165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAG AACTGCCAAT CATCGCCAGA
  Y
  CCCACGTGGT GGAAGGGAAG CATAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45418652	mCV25351993	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss135451282	ENSMUSSNP2915557	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss320830119	CHEV_3_86725780	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30318706					SNP	T	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86829165 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13328	CpG island 13328	749 bp distal
Cpgi13329	CpG island 13329	256 bp distal
Dclk2	doublecortin-like kinase 2	1006 bp upstream
Rr77821	regulatory region 77821	364 bp distal
Tssr33913	transcription start site region 33913	1510 bp upstream
Tssr33914	transcription start site region 33914	1468 bp upstream
Tssr33915	transcription start site region 33915	1445 bp upstream
Tssr33916	transcription start site region 33916	1323 bp upstream
Tssr33917	transcription start site region 33917	1293 bp upstream
Tssr33918	transcription start site region 33918	881 bp upstream