rs30319239 SNP Detail

Summary

• ID
  rs30319239
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95159991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTAAAT AATATAAGAC
  AAAGAACTCA TAGTTTGTGG GTTTGTTTTT TTTAAGTGCT TCCTAACCTG TTTTGGAATT
  GTGATTTGTG GTAGTAATCT ATTCAAATCG ACTGGCAGAA GCCATGCTTG AGTCTCAGTA
  GCAGACAAGA CCCTAGTCAA GCATCCAGTT GTTCCACTCC AGCTGACTAG TTTCCCACCA
  S
  GAGAACAAGG CTGCTCAGAG GGCAGCCTCC AGCCCAGTGA GAGACCTGGT GTGAGTGACA
  GAGGTCAGAG AGAGGGAGGG GGATGGGCGA CTGTGGCAAG GACTGGTACC TGCGCTGGTC
  AGTACTCCTG CGTAGACTGT TCCTGAGACT TGAACTTGCA ATTTAGAGGC AGAGAATGAG
  AGCTGAGGTC AGCAAATATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49123096	NES12476725	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30319239					SNP	G	G	G	G	G	G	C	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49123096	NES12476725	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95159991 () rs orientation: forward

Symbol	Name	Function Class
Gm48420	predicted gene, 48420	818 bp upstream
Pde8b	phosphodiesterase 8B	971 bp downstream
Tssr120710	transcription start site region 120710	1620 bp downstream
Wdr41	WD repeat domain 41	170 bp downstream