rs30320602 SNP Detail

Summary

• ID
  rs30320602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144996381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT GAATCTTTGT TATCTCACAA
  Y
  GTGGACAGGG AGCACTTGAG ATGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss45916978	mCV23990617	ABI	CRAMUS_MOUSE	f	SNP		T				C	C
ss48141294	NES11826294	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C		C	C		C
ss133960883	ENSMUSSNP4559920	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					C
ss322067448	CHEV_6_144999175	CHEVERUD	SCREENING_POP	f	SNP									C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs30320602					SNP	T	T	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48141294	NES11826294	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144996381 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	1442 bp distal
Gm15687	predicted gene 15687	within coordinates
Gm26666	predicted gene, 26666	within coordinates
Rr145932	regulatory region 145932	1380 bp distal
Rr148333	regulatory region 148333	20 bp proximal
Tssr2055	transcription start site region 2055	1576 bp upstream
Tssr64038	transcription start site region 64038	1985 bp upstream
Tssr64039	transcription start site region 64039	1968 bp upstream
Tssr64040	transcription start site region 64040	1949 bp upstream
Tssr64041	transcription start site region 64041	1926 bp upstream
Tssr64042	transcription start site region 64042	1908 bp upstream
Tssr64043	transcription start site region 64043	1850 bp upstream
Tssr64044	transcription start site region 64044	1834 bp upstream
Tssr64045	transcription start site region 64045	1802 bp upstream