rs30322374 SNP Detail

Summary

• ID
  rs30322374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52014393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCACAAGA GCTGGAAACC
  CGGAGCACAC TGCACAGCCT ACAGGCAACT CAACAGGCTG GACTGGGTCC TTTCCTGGAG
  GTGCCTCAGT TGACCTAAAC CTCTTCCAGG TAGCTTGGCT GGTTTCTGCA GCTTCTGAGT
  AGCTGATCTG ATCCCAGTCT TCTTTGCAGC TTGGCTTGTC TGAGTGTTTT TGTTTTTGTG
  R
  GTTGGGTTTT TTTTTTTTTT TTTTTTTTAA CAGTTTCTTT CCCAAGTCTG AGAGCAACTC
  TTAGCTTCTA TCATTTACTC TGGCTGAGAG GAGCCTAGTG AATCTGGTCA GTTTCAGGGA
  CTTCCTGAAG CTGTTTTGAG TAATTTACCT TCCTGCTTAA GGAGCACTTA TGCATTAGTC
  ATGAAGAAGC CTCTTCATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45418896	mCV22342034	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss135174921	ENSMUSSNP5933729	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320763387	CHEV_3_51910894	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30322374					SNP	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52014393 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13152	CpG island 13152	1231 bp distal
Gm65327	predicted gene, 65327	within coordinates
Maml3	mastermind like transcriptional coactivator 3	1653 bp upstream
Rr77597	regulatory region 77597	1192 bp distal
Rr83056	regulatory region 83056	885 bp proximal
Tssr33252	transcription start site region 33252	1940 bp upstream
Tssr33253	transcription start site region 33253	1916 bp upstream