rs30325723 SNP Detail

Summary

• ID
  rs30325723
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67620856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATGTTGG CACCAAGAAG
  AATTTTGAGA GGAAAACAAA ACAAAACAAA ACAAAAAAAC CAAACCCCAG AACATTAGTA
  CTAGATTCCA AAGGACCAAG GAGAGGTGGT TTTCAAAGTG TTAAAAAAAA AAAAAAAAAA
  CCTTCTGCCC AGATCTTAGG AGTGCCAGCT GCGGAGCTGA GAGAGCAAGT AAGTGGACTT
  K
  AGTTATTTGT GAAGTGTGAC CACACAGAAG GTCCACAGAA AAAGCAGAAA TGTCAAACAT
  GAACTCAATA ACTCTTTCCT GGATGTTTGT AACCAAACCC AAGCAAGTCA CACTACCAAT
  AATGGTGGGG TCTTGTCACA TGCACACCAG TGTGGAGAGA CAACACTTGA GTGTCTGTGG
  ATGATGGGTA ACTGACCCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46395045	mCV25294125	ABI	CRAMUS_MOUSE	f	SNP	G	G	T		T	T
ss61411914	NES16794253	PERLEGEN	MM_PANEL2	f	SNP	G		T	G		T	G		T	T	T		T
ss136584942	ENSMUSSNP6245430	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T			T
ss322992314	CHEV_9_67561381	CHEVERUD	SCREENING_POP	f	SNP								T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30325723					SNP	G	G	T	G	T	T	G	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61411914	NES16794253	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67620856 () rs orientation: forward

Symbol	Name	Function Class
Gm67856	predicted gene, 67856	within coordinates
Rr681959	regulatory region 681959	1550 bp distal
Rr681960	regulatory region 681960	1825 bp distal
Tssr90351	transcription start site region 90351	78 bp upstream