rs30329218 SNP Detail

Summary

• ID
  rs30329218
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107428654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCC ACACGGTCGG CTCGCCTAGG
  K
  TTCCAGCGCG TCCTCCTCGG CTCTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46395184	mCV24366233	ABI	CRAMUS_MOUSE	f	SNP	T	T					G
ss47777549	NES11986101	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T		G	T	T	G		T
ss136948286	ENSMUSSNP1295448	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					G
ss323191584	CHEV_9_107453786	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30329218					SNP	T	T	T	T	T	T	G	T	T	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47777549	NES11986101	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107428654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22292	CpG island 22292	within coordinates
Gm34106	predicted gene, 34106	618 bp upstream
Rassf1	Ras association (RalGDS/AF-6) domain family member 1	98 bp upstream
Rr368855	regulatory region 368855	202 bp downstream
Tssr86984	transcription start site region 86984	657 bp downstream
Tssr86985	transcription start site region 86985	15 bp downstream
Tssr86986	transcription start site region 86986	61 bp upstream
Tssr91394	transcription start site region 91394	618 bp upstream
Zmynd10	zinc finger, MYND domain containing 10	136 bp downstream