rs30329998 SNP Detail

Summary

• ID
  rs30329998
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53017977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTAGTTC ATTTCTGTTT
  GTTCAAGAGA GGTCATACAT CCATTAGGAA ATTGTGTATT TTTCTCTTAG CTTTTTATCT
  ACATAGATGA TTAGCAGATG AATATGTGAA GGGATATGAT TATTTCCAAG TAAGCCTTAA
  ATACTAAAAT TAGCAATGTG ATCATTAAAG ACTATATCCC TCTATGTGTT GAGGAATTAA
  S
  CTCCAGGTTC TCAGACTGCA ACTGTCCCTG GTCGGTCGGT CTTCAGAGTG GCCTCTAACG
  TAGTTTGACA GTTGCTCACA GGGTGTGGGG AGATCAGGAC CCGAAATGTT ACAAAGATCT
  GTCTGAAAAC AAAGGGAGGA GACTCTGTAA GCCACGGAAC GTGGCTCAGA AGAAACCAAC
  CCAACCCAAG TGTTTGATTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46937498	NES10812856	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30329998					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46937498	NES10812856	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53017977 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43803	predicted gene 43803			within coordinates
Gm43804	predicted gene 43804			433 bp downstream
Gm43805	predicted gene 43805			1610 bp upstream
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr374965	regulatory region 374965			within coordinates
Rr576645	regulatory region 576645			1670 bp distal
Rr576646	regulatory region 576646			1202 bp distal
Rr576647	regulatory region 576647			364 bp distal
Rr576648	regulatory region 576648			1674 bp proximal