rs30330319 SNP Detail

Summary

• ID
  rs30330319
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:89508481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGGGGCAA ATGTGTTCAA ACGTTCTATA AAATTCTCAA
  AGAACTAATA AAAAAAATCT TTTTTAAAAA GTACTGTTTT CTTACTAGCC TAACTTTATA
  W
  AAGTATTGAG ATAAATGCCC AGGTATGTAC AGTAACACAA CTATAATACT AGCACCCCAG
  AGGCTGAGGT AGAAGGACCT GTTTATAATC TGTAAAAGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47936429	NES12035168	PERLEGEN	MM_PANEL2	f	SNP	T			A	A	T	T	A	T
ss147258152	ENSMUSSNP3804222	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30330319					SNP	T	T	T	A	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47936429	NES12035168	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:89508481 () rs orientation: forward

Symbol	Name	Function Class
Rr229371	regulatory region 229371	1767 bp distal
Scyl2	SCY1-like 2 (S. cerevisiae)	within coordinates
Tssr98887	transcription start site region 98887	1571 bp downstream