rs30331774 SNP Detail

Summary

• ID
  rs30331774
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44391508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGTCCTG GGCGCCCGCT
  CCACACTGTC CAAAAAGTAC AAGATGCGGT TGTGAGTACA GCTTCCAGAA ACAGTTTCGA
  GCCGTGCTGG CACAGCGACA TCGTGTCAGA AACAGGCACC TTCATACACT TACGCCCATG
  TCACACTTTT ACCGGCAAAA GCTGACATGG ACACTCGCTG GCACACCTGT GACATCCCTC
  S
  TGATGCAGAC ACACACAGAA GCACGACGTC TCCCCTAGTT GGCCAGTAGA GGGAGCCGCT
  CGATTCCAGC TAAGGGCCAC CCGCTTTCCT TCCCTGCTCT CTGGCTCCAG GGTTCCTCCC
  ATAACTCGTG GCTGCCCAAA GCTTGGCTCT GCATCCAGAC CTGGAACCTA CATTGGGGGA
  TGAGTCACAG CCACACCCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46396448	mCV22924102	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C	C
ss136396213	ENSMUSSNP4808492	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30331774					SNP	G	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44391508 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	1477 bp distal
Cpgi21660	CpG island 21660	718 bp distal
Cpgi21661	CpG island 21661	within coordinates
Gm10023	predicted gene 10023	within coordinates
Gm47204	predicted gene, 47204	414 bp upstream
Gm47205	predicted gene, 47205	1303 bp downstream
Rr368728	regulatory region 368728	within coordinates
Rr677665	regulatory region 677665	1742 bp distal
Rr677667	regulatory region 677667	450 bp distal
Rr677668	regulatory region 677668	828 bp distal
Rr677669	regulatory region 677669	within coordinates
Rr677670	regulatory region 677670	39 bp proximal
Tssr89164	transcription start site region 89164	468 bp upstream
Tssr89165	transcription start site region 89165	431 bp upstream