rs30332698 SNP Detail

Summary

• ID
  rs30332698
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:60989496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCATCATT CCTTAGGGGG
  ATGGCCTGGG TTGGCGGGAG GGGAAAACCA AGGAGCAAGC CCCCATACCT ACAACACCTA
  CAACGAAGAT CCCATATTCA TCATACAGCC AGGTAACCAG CACCCTTCTC TGTTCAAGCT
  GCTAGGAAGC CTAGCCTCAG AATATCCCAA ATGCAGCCTC CGCCTACTCT CTCCTGGCTC
  R
  TTGAGATCAG AAGGATGAAT TGGCTTGCCA TCCAGCTATG TCAAGCTACA TGAAGGTAAG
  AATTTGCTTC TGATAATTTT CACTTCTCAT ATCTACTCAT AAAACTATGT TGTAGTTTTC
  CATCGATCAA CATCTTAAAA GACAAAGTTC CTATGATGGG AATTCAAGAG AGTCACAGGA
  GCCAGGTGAA CAGGTCTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46396262	mCV24173891	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss136537166	ENSMUSSNP5400034	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss322978169	CHEV_9_60930021	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30332698					SNP	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:60989496 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21877	CpG island 21877	331 bp distal
Gm34004	predicted gene, 34004	within coordinates
Rr204410	regulatory region 204410	469 bp proximal
Rr209953	regulatory region 209953	within coordinates