rs30333640 SNP Detail

Summary

• ID
  rs30333640
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95392266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAGAAAAC CTGAGGCTGA AGAGATTAGG TATCGTATTT
  GTTTTCAAAA CCTATAACCT CGCCATTCCA TTACAACACT TTCCATTACA TGGAAAAATC
  S
  TGGCAAAACT CTTGAGTATA AATATTCCCT TTTCAGACAC GAGTAAGGAA CCCTTTGGTG
  ACATCTAAAG GACTATAAAC TGACAAGTGT GAATGAAAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46397352	mCV24319123	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C	G
ss136828862	ENSMUSSNP1910523	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30333640					SNP	C	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95392266 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22151	CpG island 22151	1046 bp proximal
Gm28424	predicted gene 28424	1064 bp upstream
Rr206888	regulatory region 206888	134 bp proximal
Rr383784	regulatory region 383784	1188 bp upstream
Tssr86548	transcription start site region 86548	1054 bp upstream
Tssr90919	transcription start site region 90919	1644 bp downstream
Tssr90920	transcription start site region 90920	1684 bp downstream
U2surp	U2 snRNP-associated SURP domain containing	within coordinates