rs30333819 SNP Detail

Summary

• ID
  rs30333819
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95395621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAAATGTAC TTGCTTCTGT GACTCCGTCT CCTGAGCCTA
  CTCCTACTCT CAGAGTTCAT TCTTTCTTTC AGTTCCCTCC CCTACTGCTC CTTTCTTCAG
  Y
  GTCAGTTATA TACAGGGTTA CTTTGCAATC TCCTTATTCC CAAGTTTTAC ACTGTACAGC
  CTTATGTCTG TCTCTGTAAG TCACAATACT GTGGAGGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46396275	mCV24319410	ABI	CRAMUS_MOUSE	f	SNP	T	C			T		C
ss52036680	NES15049321	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C		T		T		T	T	T	T		T
ss136828928	ENSMUSSNP5467719	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
ss323100859	CHEV_9_95413987	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30333819					SNP	T	C	T	C	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52036680	NES15049321	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95395621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22151	CpG island 22151	976 bp distal
Gm28424	predicted gene 28424	96 bp downstream
Rr206888	regulatory region 206888	420 bp distal
Rr383784	regulatory region 383784	35 bp downstream
Tssr90919	transcription start site region 90919	1676 bp upstream
Tssr90920	transcription start site region 90920	1660 bp upstream
U2surp	U2 snRNP-associated SURP domain containing	1572 bp upstream