rs30334043 SNP Detail

Summary

• ID
  rs30334043
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41494050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAA ATGTTATACA TGATGGACTT
  W
  AAAGTAAAGA ACGATAGATA TGGAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46397558	mCV23037833	ABI	CRAMUS_MOUSE	f	SNP		A	A				T		A
ss61386150	NES16764674	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		T	A	A	A		T	A	T		A
ss136358672	ENSMUSSNP6056884	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss322927328	CHEV_9_41390837	CHEVERUD	SCREENING_POP	f	SNP												A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30334043					SNP	A	A	A	A	A	A	T	T	A	A	A	A	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386150	NES16764674	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41494050 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	within coordinates
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	752 bp downstream
Rr677062	regulatory region 677062	1403 bp distal
Rr677063	regulatory region 677063	1289 bp distal
Rr677064	regulatory region 677064	1141 bp distal
Rr677065	regulatory region 677065	742 bp distal
Rr677066	regulatory region 677066	615 bp distal
Rr677067	regulatory region 677067	34 bp distal
Rr677068	regulatory region 677068	113 bp proximal
Tssr84520	transcription start site region 84520	1832 bp downstream
Tssr84521	transcription start site region 84521	1787 bp downstream
Tssr84522	transcription start site region 84522	1750 bp downstream
Tssr84523	transcription start site region 84523	1654 bp downstream
Tssr84524	transcription start site region 84524	1494 bp downstream
Tssr84525	transcription start site region 84525	1438 bp downstream
Tssr84526	transcription start site region 84526	1403 bp downstream
Tssr84527	transcription start site region 84527	750 bp downstream
Tssr84528	transcription start site region 84528	270 bp upstream
Tssr84529	transcription start site region 84529	1657 bp upstream
Tssr88997	transcription start site region 88997	1946 bp upstream