rs30335663 SNP Detail

Summary

• ID
  rs30335663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32605421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATCTTAACT GGATCTCTGT CAGTGCTTCT CACCCTACAG
  TAAGTTCCAA CCAGATCCTG TTGTACACGT GGGGCTTGAG ATGTATCGAA CATTTGCCAT
  Y
  AGAGACGTCC CCATCACACC TTCTGATTTG GATGGACACT AGCACATTTT GAGCTTCTTC
  ACTTCACGAC ACAGTTAGGG ACAGGAAAAC CAGCACACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46397375	mCV22734693	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss136249640	ENSMUSSNP1740423	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30335663					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32605421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21544	CpG island 21544	1353 bp proximal
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr199954	regulatory region 199954	1621 bp distal
Rr203547	regulatory region 203547	899 bp distal
Rr206170	regulatory region 206170	1179 bp proximal
Rr401307	regulatory region 401307	1650 bp upstream
Tssr84270	transcription start site region 84270	1553 bp upstream
Tssr84271	transcription start site region 84271	1567 bp upstream
Tssr84272	transcription start site region 84272	1590 bp upstream
Tssr84273	transcription start site region 84273	1626 bp upstream
Tssr84274	transcription start site region 84274	1681 bp upstream
Tssr84275	transcription start site region 84275	1880 bp upstream