rs30337085 SNP Detail

Summary

• ID
  rs30337085
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:34546577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TACTCTTTAT AAATCGTTTG CCTACAGTGT TTATTTACAG TGCTGGGAGC TACCTCACCA
  TATTGAAATC AGAAAGAATC TGGCCTGCAT TTCAGTATAT TCTAGGATTG CAATGTGTGT
  GAACTGTCTG GTTCTATTCA AAGAATGATA AGACTGATAA CTTCCCTTAA GCTCTGAGTC
  TCCACAATTG AGTGAAAGGC AGCGATCTCC CATGTCAGTT GACACCCATA TAATTTAATC
  TCCATAATGG ATCTTTTTTT TAAATGCATC ACTCTTCAAT GCCAGAATTC TCAGTGTTCC
  M
  TGTCCCTGGT GAGGAGTCAA TTTTGTTTCT CAAGCCTTGT TCAATTTCTT CCCTGAAATC
  AAGAATGCAG AATGCACTCT GTAAGAGACG TAGCAGGAAG AAGGTTCATT CTTGTCCACT
  TAAATATTCA TGACAGCTTG CATTTTGGTT CAAAAAGACA CTTGTTTATA TAGATAAGAT
  TTAATTTATT CATAATTTAC CTAAATTTGC AGAAGCATGC ATGTACATTT TAGCGTAGAA
  GTAGCGCAAT ACATAAATCG TCACCGAGGC TTGCAAATTG TACAGCGACA GCAGTGGAAA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46397649	mCV25036823	ABI	CRAMUS_MOUSE	f	SNP		C	C					A
ss61376809	NES16749994	PERLEGEN	MM_PANEL2	f	SNP	C			A	C	A	C		A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30337085					SNP	C	C	C	A	C	A	C	A	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61376809	NES16749994	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:34546577 () rs orientation: forward

Symbol	Name	Function Class
Kirrel3	kirre like nephrin family adhesion molecule 3	within coordinates
Tssr84320	transcription start site region 84320	1022 bp upstream