rs30337369 SNP Detail

Summary

• ID
  rs30337369
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:51238487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTCTCTG GCTTCCACAT
  GTATGCAACA TACACACACA CACACACACA CACACACACA CACACGCACA CCACAAAATA
  ACGAAAAAAA ACAAAGAGAT ATTGTTAAAA TTAACACAGT GCTTCTGTTT CAATGGTTCC
  TGACATGTTT ATTAACACTT TTCCTCCCTT GTGGATGTTA AACACCTCCT AATATCATAT
  K
  TACATCACTC ATTTGATTAG CAAGCCCCCC TTTTTTTGAC ACATGCTGTA TGTGTAACAT
  GTTATCATAA ACATGTTCTT CCCCGGAATT CCATTTTATT TAATTCACTC TGAAACTTAG
  AGGCAACCAA GAAAATGATC AGGGCTCCAG GACAGAAGCT GATGAAAGTG GTAAATGCTG
  GGTGCTTTAA AAATAGATCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46938499	NES10945286	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30337369					SNP	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46938499	NES10945286	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:51238487 () rs orientation: forward

Symbol	Name	Function Class
Gpc4	glypican 4	Intron
Rr691243	regulatory region 691243	1524 bp proximal