rs30337783 SNP Detail

Summary

• ID
  rs30337783
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:89508120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGATTAAG CAGCCATAAT
  CTGAAGAGCT GACACCTAAA CTTTTCTTAA AGTAAAACCT GTAATGTTGG AAGGTTTTCA
  GAGTTCAGAT ATTAAGGTTC TCAAGCAGTG AAGTCTACAA ATACTCCAGA CCCCCAAAAC
  CTCTAAACTG TGAAATACTG CTGGTGGCAA GAACATCAGA TGAGGGGGTT AGCTAGTTAG
  W
  ACTATCCACA CTTATCACGT GCATAAAAAT CCCTTCACCC GTCACCTTGT GTTATTTCAG
  ACTTTTTGGA ACATACACAA TGTCATAGAC TCTAGCAATG GCTTAGACCT AAAAGATTCT
  CAAACGTTTA CTGTCTACTG ATTATCAATA AAGACAAGCA ATTAATAAAA GTTTATTATC
  ATTTTGAACT AAAATTTTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47936421	NES12035161	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30337783					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47936421	NES12035161	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:89508120 () rs orientation: forward

Symbol	Name	Function Class
Rr229371	regulatory region 229371	1406 bp distal
Scyl2	SCY1-like 2 (S. cerevisiae)	within coordinates
Tssr98887	transcription start site region 98887	1932 bp downstream