rs30338170 SNP Detail

Summary

• ID
  rs30338170
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:46812189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAAAAGAACT GACTCCCGAA AGCTGCGCCC TGCCCTCCAC ACACGTGCGG TGGCATGTGT
  GCACCCACAT GCACGCATAG GTACCTACAC ACCAAAGACA TGAGTAAAAG CCTCAGTTGA
  GGTGACTCAT CACATCTCCC GTAAGGTATA TCACATTCTT TTCCATGGGA ACTAATAACA
  CACGACTCAG AATAAGCTCT GTTAATAATA GCAATTGATG GTGTTCAAGA ATAGCTTTCC
  CAGAACACTT CAGCTACAGA CTTCGAAGTT AACAACACTT CAAAGACAAG GAAGGGAAAT
  R
  TCTCCCCGGG TTTCCACTTT TCCTTTCCTA GGAAGGCTTT CTAAATTCAT TGCCTCCAAT
  AGATGGACAA AAGGCTTCAC ATCCATTTAT AAAATATCCA GAACTTTGGG AAGCGTCATG
  CCATTTCGAT CCCACACTGA AATAAAGGCC CTCTCTAGAG TCCAGCACCT CATTCATGTA
  GCTTTGCTGG AGCTCACCTG GACCTTTAGG TTTTTTTCTC TACCATAAAC TCTGCCTGAT
  GGTACAAGTC ATAGGTTATT CTATGCCTTT CCGTCCTAGT CAGTCTCCTT GGTTCAAAGA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39175288	mCV25349275	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30338170					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:46812189 () rs orientation: forward

Symbol	Name	Function Class
Gm49319	predicted gene, 49319	within coordinates
Rr491231	regulatory region 491231	1463 bp distal
Rr491232	regulatory region 491232	770 bp distal
Rr491233	regulatory region 491233	679 bp proximal
Rr491234	regulatory region 491234	1105 bp proximal
Rubie	RNA upstream of Bmp4 expressed in inner ear	within coordinates
Tssr128285	transcription start site region 128285	1117 bp downstream