rs30339026 SNP Detail

Summary

• ID
  rs30339026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101864540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCC ATTTAGGGTT ATATTAGTTA
  Y
  TTTCAAAATA ACTACCTTGT TATTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46397670	mCV23562172	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss136869309	ENSMUSSNP3403380	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss323155265	CHEV_9_101889671	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30339026					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101864540 () rs orientation: forward

Symbol	Name	Function Class
Ephb1	Eph receptor B1	within coordinates
Gm31326	predicted gene, 31326	1919 bp upstream
Gm69124	predicted gene, 69124	1820 bp upstream
Rr198441	regulatory region 198441	540 bp distal
Rr198442	regulatory region 198442	within coordinates
Tssr86718	transcription start site region 86718	1852 bp upstream