rs30341647 SNP Detail

Summary

• ID
  rs30341647
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:61209328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGACTGCCA ATGTGAGACC CAAGTTCAAA TCTCCACCAC CTAAATAAAA GCTGAGTGTG
  GTCACTAGTA CTAGGAAATC AGGGGGACTC GATGGAGCTC AGGGAGCTGA TAAGCCTGAC
  CAAATCAGTG AGCTCTCAGC TCGTGAAAGA CACTGTCTCA TTCCAAAGGA AAAGGAGCAC
  GGGGGAGAGT AAGGGCTCAG CGGGTAAAAG GGCTTGCTAT GGAAGCCCTG TGGCCTGCAA
  ATCCTGCAAA TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  W
  CACACACACA CACACACACA CACATAATAA ATATTAAAAG ATAACCAAGT GAAGAGTCAC
  AAGGGCATCC AGTGTCTCAC ACATGTGCAT ATATCACACA TACACACAGT CATTATACAG
  AAGCATTCCT GGCCTGGCTC GCTCTGGTTT CTACCCAGAG ACACACATGT GACAAATATC
  CCTGCTCAAA GAGAAGGAAA AGGGGAAAGG AGGGTTTGTT AAGCACCGAC CACCTTCTAG
  GTACTAGGCA CGAAGCTAAG GAATTTGCCC CACGTGTAGT TTTTTGTTTT TTTTCAATTG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46398551	mCV23516334	ABI	CRAMUS_MOUSE	f	SNP		T	A
ss136538555	ENSMUSSNP3361706	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30341647					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:61209328 () rs orientation: forward

Symbol	Name	Function Class
Rr204421	regulatory region 204421	1234 bp distal
Rr204422	regulatory region 204422	771 bp proximal
Rr209972	regulatory region 209972	1528 bp distal