rs30341754 SNP Detail

Summary

• ID
  rs30341754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50797768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGTGACA AAAAAATCTG
  ACCAAAGCCA CCTGGCTCAC AGCTTGAGGG GACAGTCCAT GGTGGATAGT CACACTGTGT
  CTGGTCAGAT CAGATGAATG CTGATCGTCT ACTTGGCTTT CTTTTCTCAT TTTCTTTATC
  TAAGACACCT ACCTATGGTG TGGCCACCCA CCTTCAGGAT GCTTCCTCCA TACTTAAACA
  Y
  TTCTGGAAAC TTCCTCACAG ACAGATGCAG AGTATTTCCC CCATGATTCC AAATCCAGTC
  AAGGAGACAG TGAAGATGAA CCCTCAGATT CTTAGGGCTG GACTTAAGTT GTGGCACTCA
  TGACCAGTGT TACCCAGAAC TCACTGCCAA AAATTCAGAG ATCTCAGGAC TGAGTTACCA
  GTGAGGGTAA TCACCTTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46398940	mCV25209582	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss136483592	ENSMUSSNP3398450	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30341754					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50797768 () rs orientation: forward

Symbol	Name	Function Class
Gm25558	predicted gene, 25558	1484 bp upstream
Ppp2r1b	protein phosphatase 2, regulatory subunit A, beta	within coordinates
Rr209487	regulatory region 209487	within coordinates
Tssr85077	transcription start site region 85077	970 bp downstream