rs30342355 SNP Detail

Summary

• ID
  rs30342355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70702872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCACTGTA GTGAGGAGAC
  CAGCAAGCAG TTCTTCATGT TCACAGTGAA GGCCAGTTGG CCTGTCGCCC CCTGAGTCCA
  GGCTGTCTCA GAAGCTCCCC ATCTTGGTCC AGAGGGTGAG GCTGCCTGCA GGCTCGGTGG
  GTGGTGTAAG GAGAAAGAGG TTGTGATCCT GTAGCCAGCT GATCGTTCGC TTACCTCACT
  Y
  TGCCTGGACT CTTACAGACT ATGCCAAGGA ACACCTTGCC CAGCTGCAGG AGAAGGCTGA
  GCAGATCGCT GGCCGCATGC TCCGCTTCTC TGTGTTCTAC CGCAACCATC ACAAGGAGTA
  CTTCCAGCAT GCCAGGTAGG GCAAGTCAGA ACTGCTAGAT CCTTCCAGAT CCTCCTCCAC
  CCCAAAGTGC TGAGGCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39175541	mCV24332341	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss139684661	ENSMUSSNP1387399	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30342355					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70702872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6694	CpG island 6694	1434 bp proximal
Phyhip	phytanoyl-CoA hydroxylase interacting protein	within coordinates
Rr290302	regulatory region 290302	1729 bp proximal
Tssr4470	transcription start site region 4470	1178 bp upstream
Tssr126423	transcription start site region 126423	1023 bp upstream
Tssr126424	transcription start site region 126424	1107 bp upstream
Tssr126425	transcription start site region 126425	1134 bp upstream
Tssr126426	transcription start site region 126426	1291 bp upstream
Tssr126427	transcription start site region 126427	1388 bp upstream
Tssr126428	transcription start site region 126428	1421 bp upstream