rs30343740 SNP Detail

Summary

• ID
  rs30343740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106699629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCACGAGGAG AGCGAGCGCG CGGCCCGCTG GGCGGGAGAG TGGGCGCCGC GCTGGGGGGA
  GGGGCGGCAC CTGCTTCGGC TGCGGGCGGC GAGGGGCTGG GCGAGCCCAC CGAGGCGGCT
  GGGCCCGGGG CCTGACGAGG CTCTCCTTCC GAGCCCGGGC CCGGGCCCGG GGGCGGGGCC
  TCCGGCTCCT TCCTCCCGTC CTGTAAAGAA GCCTCTTTAG AGTAACTCTT CCGCCGGGGT
  GTGGAGGGCA GGGGATGCTC GCCTCTACCT AAAGGAGGTG CTCTTTGAAT CTCTCTCTTC
  Y
  ACTCCAAGTC TCTGTCCCTC ACGGGACGAG GGGCATCTTC TTTCCCATGC CGCCCGGCGG
  ACCCCTTCAG GAACGGTGTC CCCGCCTCCA GCCTCAGTCA CCTGGGCGGG CTTTTCCCTC
  GGTCGGCTCC GTGCCACCTC CCACTTGCAC CCTCCCGGCT CTCCGACCGG GGAGGGGGCG
  GAGCTCGGCG GGAACCCCTC CCACTTGTAC AATGCAGTAG CGAGGGGACG GGGAGAGAGG
  TATGTGGGTG TCCAGACGCC CAGAGTCTGA CCTAAGGTTG CCTGTCAGGT TTCCCCAGCG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46398574	mCV25234284	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30343740					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106699629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22276	CpG island 22276	within coordinates
Dcaf1	DDB1 and CUL4 associated factor 1	within coordinates
Rr368848	regulatory region 368848	398 bp downstream
Rr401655	regulatory region 401655	16 bp upstream
Rr686402	regulatory region 686402	546 bp distal
Rr686403	regulatory region 686403	within coordinates
Tssr86935	transcription start site region 86935	436 bp downstream
Tssr86936	transcription start site region 86936	414 bp downstream
Tssr86937	transcription start site region 86937	396 bp downstream