rs30346930 SNP Detail

Summary

• ID
  rs30346930
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:94259447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGTAACTT TGAGTTCTTG
  ACGTGTCTGG CGCCCTTTCC TGTGTGTTAA AGAGGCTTAT GGCACAGAAT GTTTGAATTG
  GGTGTTTATA AACCTTGCTT AGAATTTGGC TAGTGATACC ATTTTAGACC TGGGATGCCA
  GGTGCCTGTG AACCAGGTGA TGGGGTCTGG TGGGGGTTGG CAGTGAGGTC TGTGTTTGCT
  Y
  ATATCATCCG GGGAAGATAG GCTCAACAGG AAAATACACT CAGCCCTGTG CCGTGAGTAA
  CCAGGGTTTT CACTCTCTTC AGAGGAACCA TCTGTTTCAG TTCCCAGGAC CGGGAGCCAG
  ACCACGATGC CGACCATGCA GGGAGTCATG TGAGAACCCA GGCTAGCTAA GGGCCCCACA
  TTTTCCATGT GTTCTGTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49126866	NES12420671	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30346930					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49126866	NES12420671	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:94259447 () rs orientation: forward

Symbol	Name	Function Class
Lhfpl2	lipoma HMGIC fusion partner-like 2	within coordinates
Rr285356	regulatory region 285356	46 bp proximal