rs30347785 SNP Detail

Summary

• ID
  rs30347785
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:94258094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATTCAAA CCACCACGCC
  AGTGATAAGC CCTAGTTTGC TAGACTCAAT GTACTACCAA TTGGGTCACA TCAGTTATTA
  TTGCAAAGAG TTCATACTAG TGTCAGATAA ATGGCATTGA GTTTAATACT CTAATGTTTT
  TCTTCAGTTC TGATCTACTT TGTTCTGTTG CTGCTCAGGA AAAATTTCAG AGCTCTGCAT
  K
  GTAGAATAGT CTTCCCCTGT TAGCCTCTCT GTAGACCATT TTAAGTCCTA TATCATTTCT
  CTCAGAATGG GGACGTAGAC GTGGCCAATT TAAATAACCC TGATTTATTG CTTGATGATC
  ACTCTTACAG AGGGATTGCC AGAAAGAAAG TTGGAAACGA TTCAGTCACA GGTGATTAAT
  GATTGAGTAG ATTTTAATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49126871	NES12420780	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30347785					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49126871	NES12420780	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:94258094 () rs orientation: forward

Symbol	Name	Function Class
Lhfpl2	lipoma HMGIC fusion partner-like 2	within coordinates
Rr277640	regulatory region 277640	1894 bp distal
Rr285356	regulatory region 285356	1399 bp proximal