rs30349040 SNP Detail

Summary

• ID
  rs30349040
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:94205748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAACCCT ATCCTGAAAT
  AATAGCTTTC TCCCTGTCTT CCTCAATGAT AAGGAGTAAA TTCCTTGCAT TTTGTAGACT
  TCTTTTTCCG CGTAGCGCAG GTCATTTTTC TGTTGTGTGG TTTTGTGTAG CCCTGGGATG
  ATCTTGGATG GTTCTTCAAA GCAGAGAGGC CTTGGGCCAT CCCAGGAACC TTGCTGTTAC
  W
  TGTGGCTCCT TCCCTTGGTT TCCCTGTGGG CCACTCTGCT GTCCATGCCC ACTAACATGG
  TCCGTTCCCC TTGTGGCTAC AATCTGAGGA AGAGAAAGAA TGGAGAGTTG AAACTTCCAT
  CTCAGCCCAG CAGGCTGGAG ATAATGTTTC TCTTTCTCCT GGTCCCCGGA TTCAAAGTAT
  ACTTGAATTT TATGGGGGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49127284	NES12423400	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	T	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30349040					SNP	A	A	A	A	A	A	T	A	A	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49127284	NES12423400	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:94205748 () rs orientation: forward

Symbol	Name	Function Class
Lhfpl2	lipoma HMGIC fusion partner-like 2	within coordinates
Rr274132	regulatory region 274132	1348 bp distal
Rr274133	regulatory region 274133	1053 bp proximal
Rr285346	regulatory region 285346	within coordinates
Tssr120664	transcription start site region 120664	684 bp downstream