rs30349043 SNP Detail

Summary

• ID
  rs30349043
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:94205426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTAATTT TTGGCTGGGC
  TGTCTTGCCC ACTGTTGGGT TGGGTTGTTG ATTTGAAAGA TCTGCAGATA CTTGTTTCCA
  GGAAAGGTCG ATTTCCAGTG GACTGTGTTA AGCATTTTGC TTTAGAGAAG ACTTAGGGAT
  CTTGCTCTCC TTGCCTTTAT GGCCTCTTTC AGTTAGGAAA CGGCTCTTCC CTTTCCTTTA
  R
  GGTCTTTTAA GATTGTGGGC CTGAGTTGGA AAGAGGCCCC TTTGGATAAC TAGCTCATAA
  TTTTTATCTG GAGGCATGAA AAGTTTAAGG ATGACTGGGT TACAGAGTAC TTCCCCCCCT
  CCCCCAACCC TATCCTGAAA TAATAGCTTT CTCCCTGTCT TCCTCAATGA TAAGGAGTAA
  ATTCCTTGCA TTTTGTAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49127287	NES12423395	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30349043					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49127287	NES12423395	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:94205426 () rs orientation: forward

Symbol	Name	Function Class
Lhfpl2	lipoma HMGIC fusion partner-like 2	within coordinates
Rr274132	regulatory region 274132	1026 bp distal
Rr274133	regulatory region 274133	1375 bp proximal
Rr285346	regulatory region 285346	within coordinates
Tssr120664	transcription start site region 120664	362 bp downstream