rs30350825 SNP Detail

Summary

• ID
  rs30350825
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:94203968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTGGAAA TTTCCAGTCT
  CCATATGGTA TTTATCTATT ACATTTGAAA TTATATCCAG AAAATAAATT GAGATGAGAA
  GGTCCAGGTG TTGTTTGAGT GGGTTTTGGA CATCTTTAGA CCTTGAGAAT TTAAGTATCT
  GTGCTGTGAT GTCCCCAAAG AAGCTATGTG TGGGACCTTT GTGGGACCTT GTCTCTACAT
  R
  AGGAGCGCCA TAATGAGCAG AAAGCACCTA TGAGGGCCTG GCTCTCAGAG AATCTTGTTT
  TGTTCATTAA GACTCTTAGC AAGTCAGGGA AACAACAAAC AAACAAACAA CCAAGGCTGG
  AGAGATGGCC CAGGAGTTAA GAGTGTGTTT TGTTCTTGCA GACAACTGTG GTTAGGTTCC
  CAGCCCCTAT ACTAAGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49127299	NES12423565	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30350825					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49127299	NES12423565	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:94203968 () rs orientation: forward

Symbol	Name	Function Class
Lhfpl2	lipoma HMGIC fusion partner-like 2	within coordinates
Rr274132	regulatory region 274132	33 bp proximal
Rr285346	regulatory region 285346	634 bp proximal
Tssr120664	transcription start site region 120664	1091 bp upstream