rs30350833 SNP Detail

Summary

• ID
  rs30350833
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:94203071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGAGTT TCCCCACTCC
  CGCCCCTGCT TTGGCTCAGA CCTTCGAGAT AATGAGCAAC TCTATCTGAA GTAATAGGTG
  GACAGAAATG GACATCAAAG GACCCCCATC CTTCAAGGAC GGGCTGGGAT TTGATTTAAG
  AAGAGTTGGA TGATTAAGGC AGCAGCTTTG CCTATCATTA GAACAATCCA GCCAGCCTCC
  W
  CTTCTACAGA TGCAGGATAC ATCTTAACTG CGCCTTAAGG GCCACGTCAG CCTGGGAAGT
  GTGCAGTGGG AGTTGGTTGG TGTGGTGAGA TGGGGATGGA TGTTGCAGGA AGAGTGGGCA
  GTACAGGGCG GGACCAGACC TCTGAGCTGC ACTCTGCAAA GGTTCCTTGG GCATGGGTCT
  GGGTTTTAGC AGTACTCCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49127309	NES12423554	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T	T	A	T	T	T	T	T
ss144960324	ENSMUSSNP1027795	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30350833					SNP	T	T	A	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49127309	NES12423554	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:94203071 () rs orientation: forward

Symbol	Name	Function Class
Lhfpl2	lipoma HMGIC fusion partner-like 2	within coordinates
Rr274132	regulatory region 274132	930 bp proximal
Rr285346	regulatory region 285346	1531 bp proximal
Tssr120664	transcription start site region 120664	1988 bp upstream