rs30351470 SNP Detail

Summary

• ID
  rs30351470
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146164484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAAAAAA GAAATCTTAG
  AAAGCAAGAC ATAGGACTTC CAGTTCTTAA GGGATGGCTT TTATGACATT ATAGAAGAAA
  ACTCACTTTG TATCTGAACA AATATACCTG TTTTTGCAAC CTTAAGATTT GGCATGGTTG
  CCCCAGATTG TATGTACATA TTAAGAGATA TATAAGCAGA ATAATTATGT GTTTTTCTAC
  Y
  CCTATGTGAC TAGGATATAT TGACTACATC AAGATGGGCA TTAGCCCTAA GAAACTTGTA
  ATGGGTGTTC CCTGGTATGG CTATGATTAC ATTTGCCTAA ATCTCTCAAA GGTAAGAACA
  ACTTATATTG GGTATATGTG ATATTACTCC ATCATATACT TTGTTCTGCT CTGAATATAT
  GAAATCTTAT TTAGATTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss45421191	mCV24074704	ABI	CRAMUS_MOUSE	f	SNP	T	T	C				T
ss47027568	NES10840290	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T		C	T	T		T	C
ss321010475	CHEV_3_146121693	CHEVERUD	SCREENING_POP	f	SNP											C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30351470					SNP	T	T	C	T	C	T	T	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027568	NES10840290	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146164484 () rs orientation: forward

Symbol	Name	Function Class
Ctbs	chitobiase	Intron
Rr587031	regulatory region 587031	577 bp proximal
Spata1	spermatogenesis associated 1	Intron