rs30351500 SNP Detail

Summary

• ID
  rs30351500
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32453185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAG GCGGTGATAA CTTTTTAAAG
  M
  CAGCTCACTG TCTTAGTCTT CTCTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45420891	mCV24283437	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss134749301	ENSMUSSNP2270322	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		A
ss320698069	CHEV_3_32297958	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30351500					SNP	C	C	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32453185 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13056	CpG island 13056			963 bp distal
Gm56797	predicted gene, 56797			1841 bp downstream
Pik3ca	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha			Intron
				Noncoding-Transcript-Variant
Rr397633	regulatory region 397633			1883 bp downstream
Rr574953	regulatory region 574953			1961 bp distal
Rr574954	regulatory region 574954			1355 bp distal
Rr574955	regulatory region 574955			1624 bp distal
Rr574956	regulatory region 574956			63 bp distal
Tssr28746	transcription start site region 28746			1949 bp downstream
Tssr28747	transcription start site region 28747			1892 bp downstream
Tssr28748	transcription start site region 28748			1857 bp downstream
Tssr28749	transcription start site region 28749			1771 bp downstream
Tssr28750	transcription start site region 28750			1740 bp downstream
Tssr28751	transcription start site region 28751			567 bp downstream
Tssr32929	transcription start site region 32929			810 bp upstream