rs30351643 SNP Detail

Summary

• ID
  rs30351643
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46037779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATTGAGG TAAATGTTGA
  CTGTTGTTTC TGACTTCTGT TTTAAATCGT GGCCTTATAT AACATGGGGG CTGCAGCTCA
  GTTGTGTCAT CCTAGCATCC TCAGGGAGCT GCCCAGTGCT CAGCCTGTCT CTGTGAGAAT
  GAAGGTAGAT GGGGGCAGAA GCCTTTGGCC TTCAGTTTCT GCACCAGTGA TCCTGACAAA
  K
  TCATGCATGA CATACAGGGT TTGGAAAAAA GGGAAACAGC ACTGACTGTG GACTTTTAAA
  AAGTTACAAA ACAGACTGCA GACTGGACAA AGTACAGCTG GATTGCATTA TTGAAAGGCC
  TGGCATTTTA TGGGATCCAC CCTTTTATGA ACAAATGGTC CATGAGAACG AAATTCACAT
  TTCCATTTAG AAATCAAGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46399039	mCV25177536	ABI	CRAMUS_MOUSE	f	SNP	T	T	G					G		G
ss47696248	NES11312337	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G		T	G	G	T	T	G	G	T	G
ss136423307	ENSMUSSNP1357129	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30351643					SNP	T	T	G	G	G	G	G	G	T	G	G	T	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47696248	NES11312337	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46037779 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	within coordinates
Rr678057	regulatory region 678057	938 bp proximal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	752 bp upstream