rs30352424 SNP Detail

Summary

• ID
  rs30352424
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128070109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGATACTCA GCAGGTAGCC TTCAGTTCTG CCTCCTCTCC
  TCTCCCCTCC TCTCCAGCAA GTTATTCTCA CGAAGCTACC CCCCAACCAC ATACTCTCAA
  R
  TGGCCTTTTT GGCACTGAGA TGAGAGATGA AGATCCCCAA TCCATACCAA GTTTCCCGTG
  TGACCTCCCA CAGAAGGGCG CTATGATTGG AGACTACAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45919037	mCV22306006	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss133637219	ENSMUSSNP1422993	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss321943863	CHEV_6_128043164	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30352424					SNP	G	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128070109 () rs orientation: forward

Symbol	Name	Function Class
Gm55163	predicted gene, 55163	1771 bp downstream
Rr639177	regulatory region 639177	986 bp distal
Rr639178	regulatory region 639178	1967 bp distal
Rr639179	regulatory region 639179	1449 bp distal
Rr639180	regulatory region 639180	59 bp distal
Tspan9	tetraspanin 9	within coordinates