TCCACCCCCA TCTTTCATCG AAATGCCTCT CCGTGCCTCA GTTTCCTCAT TTGTCTTCCT TTGGTCCTTT TCTGAGCTGA GAAAAAGACT AGGAAATCCT W CTCATACAAG ATGTTTTTAA TGTCCTGGGA GGAGAAGCTG TGGGGCAGTG GCATGGAGGC ACATGCCTCT TCCCTAAAAT GGCAGAGATG GTAGTAAGG W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss39671978 | mCV22700109 | ABI | CRAMUS_MOUSE | f | SNP | A | A | T | A | T | |||||||||||
ss50602492 | NES13639512 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | A | A | T | A | T | A | ||||||
ss146042369 | ENSMUSSNP6993323 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | |||||||||||||||
ss325720393 | CHEV_19_10510390 | CHEVERUD | SCREENING_POP | f | SNP | T | A | ||||||||||||||
SNP Consensus Information | |||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
SM/J |
WSB/EiJ |
||||
rs30352592 | SNP | A | A | T | T | T | T | A | A | T | A | T | T | A | T | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss50602492 | NES13639512 | PERLEGEN | MM_PANEL | f | SNP | A/T |
Location: Chr19:10413264 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr544111 | regulatory region 544111 | 1453 bp distal | ||||||
Rr544112 | regulatory region 544112 | within coordinates | ||||||
Rr544113 | regulatory region 544113 | 214 bp proximal | ||||||
Rr544114 | regulatory region 544114 | 1704 bp proximal | ||||||
Rr544115 | regulatory region 544115 | 1755 bp proximal | ||||||
Syt7 | synaptotagmin VII | within coordinates | ||||||
Tssr155051 | transcription start site region 155051 | 694 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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