rs30353449 SNP Detail

Summary

• ID
  rs30353449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108640581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTGTTGGAG TTGTTGGTTT TAGTTTTGTG GTGGTTTTGG
  TTGTTCTGGT TTTGGTTTTC CTAAAGCTCA GAAGTAACCT GCCAGCCTCA CCCTCCCAGG
  Y
  GGGGGGATTA CAGTGGGAGC TGTAACAGTT TCTTGGGCAT GGTGGTGCAT GCCTGTAGTC
  CTGTCCTTGA GAGGCAGATG GAGCCCCTTA AATTCATAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45919354	mCV24297774	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30353449					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108640581 () rs orientation: forward

Symbol	Name	Function Class
Bhlhe40	basic helix-loop-helix family, member e40	Intron
Cpgi17812	CpG island 17812	1887 bp distal
Rr399817	regulatory region 399817	1738 bp downstream
Rr636159	regulatory region 636159	1633 bp distal
Rr636160	regulatory region 636160	within coordinates
Tssr58078	transcription start site region 58078	1843 bp downstream
Tssr58079	transcription start site region 58079	1624 bp downstream
Tssr58080	transcription start site region 58080	1277 bp downstream
Tssr58081	transcription start site region 58081	842 bp downstream
Tssr58082	transcription start site region 58082	478 bp downstream
Tssr58083	transcription start site region 58083	1119 bp upstream
Tssr58084	transcription start site region 58084	1393 bp upstream
Tssr62392	transcription start site region 62392	1365 bp downstream