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rs30353451 SNP Detail
Summary
  • ID
    rs30353451
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr6:89316834 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TGTAT TTTACTGCCA CCTTGTCTAG
    K
    AGACATGAGA CCAGGAAGCA GCAGA                                      
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
C3H/HeJ
C57BL/6J
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
SM/J
WSB/EiJ
ss45919356 mCV24907686 ABI CRAMUS_MOUSE f SNP G G G T G
ss47999967 NES11908755 PERLEGEN MM_PANEL2 f SNP G G T G G G G G G T G
ss321851940 CHEV_6_89289846 CHEVERUD SCREENING_POP f SNP T G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
C3H/HeJ
C57BL/6J
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
SM/J
WSB/EiJ
rs30353451 SNP G G G T G T G G G T G G T G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47999967 NES11908755 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:89316834 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Plxna1 plexin A1 within coordinates
Rr137390 regulatory region 137390 34 bp distal
Rr141614 regulatory region 141614 1834 bp distal
Rr150843 regulatory region 150843 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory

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