rs30353470 SNP Detail

Summary

• ID
  rs30353470
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131197943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATATGATTG CTATAGATTC TACATAGACC TCTGTGCCGA
  AAACTGTTAA ATGGAGAACT AGGAACATGT GGTCCTTTGT GCTTCAGTTG CCTATTCTGT
  Y
  ATGCCATTTA CAGAAAAATA AAACTGGGAG TGCTGAAACA CTCCCATAAT TCTCGCTTTT
  GGGAGCCAGA GTCAGGAGCA TCGGGAGTTC AAGACTGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45419623	mCV22772257	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135904602	ENSMUSSNP1564974	ENSEMBL	ENSEMBL_Sanger	f	SNP				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30353470					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131197943 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13839	CpG island 13839	1244 bp distal
Gm36753	predicted gene, 36753	within coordinates
Rr585351	regulatory region 585351	1778 bp distal
Rr585352	regulatory region 585352	899 bp distal
Rr585353	regulatory region 585353	1496 bp distal
Rr585354	regulatory region 585354	367 bp proximal
Sgms2	sphingomyelin synthase 2	771 bp upstream
Tssr31736	transcription start site region 31736	1777 bp downstream
Tssr31737	transcription start site region 31737	614 bp downstream
Tssr35713	transcription start site region 35713	1947 bp upstream
Tssr35714	transcription start site region 35714	1687 bp upstream
Tssr35715	transcription start site region 35715	1651 bp upstream
Tssr35716	transcription start site region 35716	1516 bp upstream
Tssr35717	transcription start site region 35717	1440 bp upstream
Tssr35718	transcription start site region 35718	1414 bp upstream
Tssr35719	transcription start site region 35719	1171 bp upstream
Tssr35720	transcription start site region 35720	1125 bp upstream
Tssr35721	transcription start site region 35721	894 bp upstream
Tssr35722	transcription start site region 35722	846 bp upstream
Tssr35723	transcription start site region 35723	784 bp upstream
Tssr35724	transcription start site region 35724	773 bp upstream
Tssr35725	transcription start site region 35725	734 bp upstream