rs30353768 SNP Detail

Summary

• ID
  rs30353768
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113368825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCA TTTCTGCCTT CAGCTTAACT
  R
  AGAGGATATG CCTGACTACC TTACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45919454	mCV22281426	ABI	CRAMUS_MOUSE	f	SNP		G					G		A
ss51841809	NES14761271	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	A		G	A	A	G		G	A	A	G		G
ss133564689	ENSMUSSNP4642406	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
ss321910742	CHEV_6_113341858	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30353768					SNP	G	G	A	G	A	A	G	G	A	A	G	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51841809	NES14761271	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113368825 () rs orientation: forward

Symbol	Name	Function Class
Arpc4	actin related protein 2/3 complex, subunit 4	1416 bp downstream
Cpgi17842	CpG island 17842	303 bp proximal
Rr636505	regulatory region 636505	176 bp proximal
Tssr58207	transcription start site region 58207	1148 bp downstream
Tssr58208	transcription start site region 58208	553 bp upstream
Tssr58209	transcription start site region 58209	646 bp upstream
Tssr58210	transcription start site region 58210	1198 bp upstream
Ttll3	tubulin tyrosine ligase-like family, member 3	within coordinates