rs30353935 SNP Detail

Summary

• ID
  rs30353935
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137667744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGCCTTC TCTTCCACTG
  ACGGCAAAGG TTCTTGAATA TTAACGTCCA TAAAGGCCAT GAATTCAGAG ACAGAGGTGA
  CAGGCAGGAC GTGTGTGTCC TTGGCCTTCC TCCCTAGTCT GGGAATCAGT CAGAAGCCTG
  CTTCTGTCGG TGAGTCACAT GACCCTAGTC TTCTCCCTTG CCTGCCTGCA TGATTATCTA
  M
  GGAATAGAGT GTCACATTTC CAAGGCTGTC ATTTTCCACT TCATCTTCAA GATGAAAAAC
  GTTGTATAAA ATCTCTCCTG CTCACTTCAT TTGTTCATTT CTCTTCTCCC TAGTCTCACC
  TCCCACTCTG TGGCCAACAC CCCAACTTCA GAATGTATCA GAGTCAACAG TAAGGTCTGA
  AGAGCCAGGT TGCTGGGTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	NZW/LacJ	SM/J
ss45420319	mCV27576198	ABI	CRAMUS_MOUSE	f	SNP	C	C	A			C	C
ss46992883	NES10880127	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	C		C		C
ss135945635	ENSMUSSNP4923271	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A				C
ss320977300	CHEV_3_137624947	CHEVERUD	SCREENING_POP	f	SNP								A		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	NZW/LacJ	SM/J
rs30353935					SNP	C	C	A	A	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46992883	NES10880127	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137667744 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dapp1	dual adaptor for phosphotyrosine and 3-phosphoinositides 1			Intron
				Noncoding-Transcript-Variant
Rr586037	regulatory region 586037			within coordinates
Rr586038	regulatory region 586038			1498 bp proximal