rs30354160 SNP Detail

Summary

• ID
  rs30354160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45317131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAACACGG CGGGGAGACA
  TGACTGCCCC ATGAGAATGT AAGCTGTCAC GGTGCTATCC ACAGGGCCTT GCAGGAAGCT
  CTGGAGGCTA AGGGACTTGG AAGTCCCCAT CCCGACCCAG GACCCCTATC TATACTTCCC
  ATGTGCCCTT CACCGAGAGT GCATCTTGAA ATTCTCACTT CCTCATCTCA CTCCCAGCTG
  Y
  GGCTTCCCCG GCTGATGGAA GAATACTGTT GCTGCCCATC CCAGCCCTGC TCTCTGGAAA
  TTTCCTCTGG GAGGGGCTGG AGACCTCAGG CAGCTCCTCC CTGCCTCTGG CTCCCCCCAT
  ACCTCCCCTT GCCTGGGTCA GCAAGAGCCC CTCTGGGGAC ACTCAGCCTT TCTTGTGACT
  GGGGTAAATA TTACCTGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss46399067	mCV25163990	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs30354160					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45317131 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fxyd2	FXYD domain-containing ion transport regulator 2			Intron
				Noncoding-Transcript-Variant
Gm68814	predicted gene, 68814			within coordinates
Rr677905	regulatory region 677905			403 bp distal
Rr677906	regulatory region 677906			within coordinates
Tssr84790	transcription start site region 84790			102 bp upstream
Tssr84791	transcription start site region 84791			233 bp upstream
Tssr84792	transcription start site region 84792			281 bp upstream
Tssr84793	transcription start site region 84793			1286 bp upstream