rs30354877 SNP Detail

Summary

• ID
  rs30354877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96139790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG CAAAGCACAA AAGTCTTGCC
  Y
  TGTTGTCAAG AAATACATCC AAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46399150	mCV23540969	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss136830304	ENSMUSSNP4390984	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323107356	CHEV_9_96158156	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30354877					SNP	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96139790 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1483 bp upstream
Tssr86589	transcription start site region 86589	960 bp upstream
Tssr86590	transcription start site region 86590	977 bp upstream
Tssr86591	transcription start site region 86591	991 bp upstream
Tssr86592	transcription start site region 86592	1054 bp upstream
Tssr86593	transcription start site region 86593	1069 bp upstream
Tssr86594	transcription start site region 86594	1271 bp upstream
Tssr86595	transcription start site region 86595	1509 bp upstream
Tssr86596	transcription start site region 86596	1533 bp upstream