rs30357069 SNP Detail

Summary

• ID
  rs30357069
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:89532280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAGGGCC AGGGTGAGAG
  CCTTTGGCAT TGCTGAGTGC AGTATGTGTT ATACACCACA GCCTTGAGGC CAGACAATGT
  GTGAACTTGG GCAAGTATTG GCCTCCAGGG TAGTTGTAAC ATGGGCGGCT GGTATGACCC
  TGCTTAGGTG GTCCCTCTAC CAAAAATGAT ATCTAGGGAA TGTTTTGACT TCTGTGAGTT
  Y
  TGTGGCATGT CTCCTCACGT TTCCCATCCT CTATTACAGA TGCTTTCGTG AACAGCCAGG
  AATGGACACT CAGCCGATCG GTACCGGAGC TCAAAGTGGT GAGTGGCATC TCTGGCCTTG
  GGAGGTGGGG GGCTAGAATA AGCAGGATGG GAGTGTGCAA GCTTGCCCAT ATGGAGTTCT
  GTTTCCTGAG GCCTGTAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss49626095	NES12946857	PERLEGEN	MM_PANEL2	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs30357069					SNP	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49626095	NES12946857	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:89532280 () rs orientation: forward

Symbol	Name	Function Class
Agap1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	within coordinates
Rr18178	regulatory region 18178	1921 bp proximal
Rr23524	regulatory region 23524	121 bp proximal
Rr35151	regulatory region 35151	81 bp distal
Tssr8003	transcription start site region 8003	1298 bp downstream