rs30357109 SNP Detail

Summary

• ID
  rs30357109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7462089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGTCACTCA ACGGCAGGCA TCAATTGATA GTGCAGCAAA CTGTCCCCCG ATGCTGTTGA
  GTGCCAGAGA ACGATGGCAA AGGGAACTGT ATGCCAGTAA TCAGGAATCC AATTACTTAT
  TTTGGTGAAT GCTTAAGTAT TTTTTTCTTA AAGTCTATGT TAAAGTCAGG CATGCTGGAT
  AGTTCTATGT TACCTTGAAA TCTGAAAAGA GGGAACCTTG ATTAAGAAAA TGACTCCAGC
  CAGGCAGTGG TGGCACACAC CTTTAATCCC AGCACTTGGG AGGTAGAGGC AGGTGGATTT
  Y
  TGAGTTCAAG ACCATCCTGG TCTACAGAGT GAGTTCCAGG ACAGCCAGGG CTACAACAGA
  GAAACCCTGT CTCTGGAAAA AAAAAAAAAA AAATGACTCC AGGGCTGGTG AGATGGCTCA
  GTGGTTAAGA GCACTGACTG CTCTTCCAGA GGTCCTGAGT TCAAATCCCA GCAACCACAT
  GGTGGCTCAC AACCATCTGT ACTGGGATCT GATGTACTCT TCTGGTGTGT GTTTGAAGAC
  CGTTACAGTG TACTCATATA AATAAAATAA ATAAATCTTT AAAAAAAAAA GAAAAGAAAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39672487	mCV23214203	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30357109					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7462089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10559	CpG island 10559	1231 bp distal
Gm58988	predicted gene, 58988	within coordinates
Rr543685	regulatory region 543685	1533 bp distal
Rr543686	regulatory region 543686	953 bp distal
Rtn3	reticulon 3	1443 bp upstream
Tssr5428	transcription start site region 5428	1740 bp upstream
Tssr5429	transcription start site region 5429	1656 bp upstream
Tssr5430	transcription start site region 5430	1560 bp upstream
Tssr5431	transcription start site region 5431	1434 bp upstream
Tssr157987	transcription start site region 157987	1601 bp upstream
Tssr157988	transcription start site region 157988	1576 bp upstream
Tssr157989	transcription start site region 157989	1514 bp upstream
Tssr157990	transcription start site region 157990	1495 bp upstream
Tssr157991	transcription start site region 157991	1445 bp upstream